BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB016D03SP1|AL426997
(736 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig687 546 e-155
>3x_Contig687
Length = 2400
Score = 546 bits (260), Expect = e-155
Identities = 368/433 (84%), Gaps = 1/433 (0%)
Strand = Plus / Minus
Query: 1 gatcttactcattgagtctggttaccgtactattggaagatttgaggacgtattcgaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gatcttactcattgagtctggttaccgtactattggaagatttgaggacgtattcgaagt 396
Query: 61 ctcaatcgaaaaatgacacgatcatcaaattgcmatctaggaaggataagaacaaaccyc 120
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 395 ctcaatcgaaaaatgacacgatcatcaaattgcaatctaggaaggataagaacaaacctc 336
Query: 121 atttaaagatcgatgagaccttccgamagccaatcmmagaaaatctaatacaattaatcg 180
|||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||
Sbjct: 335 atttaaagatcgatgagaccttccgaaagcaaatcaaagaaaatctaatacaattaatcg 276
Query: 181 attgtgatcagttggttccggcmgtgaagcyatacsaggataaattthtagcagagttga 240
|||||||||||||||||||||| ||||||| |||| ||||||||||| ||||||||||||
Sbjct: 275 attgtgatcagttggttccggcagtgaagctatacgaggataaatttatagcagagttga 216
Query: 241 matctgttattmaggktmatcymccscctgasagacmaacmccygamgagtcgamagatg 300
|||||||||| ||| | ||| || | ||| |||| ||| || || ||||||| |||||
Sbjct: 215 aatctgttattaaggttaatctaccgcatgagagacaaacacctgaagagtcgaaagatg 156
Query: 301 gcycymmmcccmcygccgcccctggg-tccmggcyatcmmmgttgattccmgaacmatcm 359
|| | || | |||||| |||| || ||| ||| |||||||| |||| |||
Sbjct: 155 gctctaaaccaactgccgccaatgggctcaaggctatcaaagttgattcaagaacaatca 96
Query: 360 tctccmgagttcccatccmtgcytgtcmatmtmttcccytctgccatcccacyattgncg 419
|||| ||||||| ||| ||| ||| || | ||| | |||| ||| || |||| |
Sbjct: 95 tctcaagagttccaatcaatgcttgtaaatatattcacttctgaaatcgaactattgaag 36
Query: 420 aggttcacgcggc 432
||||| |||||||
Sbjct: 35 aggttaacgcggc 23
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.46 0.723 1.37
Gapped
Lambda K H
1.46 0.723 1.37
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2129
Number of Sequences: 1807
Number of extensions: 2129
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 736
length of database: 10,358,551
effective HSP length: 16
effective length of query: 720
effective length of database: 10,329,639
effective search space: 7437340080
effective search space used: 7437340080
T: 0
A: 40
X1: 5 (10.5 bits)
X2: 14 (29.4 bits)
S1: 11 (23.6 bits)
S2: 47 (99.2 bits)